- 2019 :
Correard S, Plassais J, Lagoutte L, Botherel N, Thibaud JL, Hédan B, Richard L, Lia AS, Delague V, Mège C, Mathis S, Guaguère E, Paradis M, Vallat JM, Quignon P, André C. Canine neuropathies: powerful spontaneous models for human hereditary sensory neuropathies. Hum Genet. 2019 Apr 6. doi: 10.1007/s00439-019-02003-x. PubMed PMID: 30955094.
Bunel M, Chaudieu G, Hamel C, Lagoutte L, Manes G, Botherel N, Brabet P, Pilorge P, André C, Quignon P. Natural models for retinitis pigmentosa: progressive retinal atrophy in dog breeds. Hum Genet. 2019 Mar 23. doi:10.1007/s00439-019-01999-6. PubMed PMID: 30904946.
- 2018 :
Segaoula Z, Primot A, Lepretre F, Hedan B, Bouchaert E, Minier K, Marescaux L, Serres F, Galiègue-Zouitina S, André C, Quesnel B, Thuru X, Tierny D. Isolation and characterization of two canine melanoma cell lines: new models for comparative oncology. BMC Cancer. 2018 Dec 4;18(1):1219. doi:10.1186/s12885-018-5114-y. PubMed PMID: 30514258; PubMed Central PMCID: PMC6280433.
Ollivier M, Tresset A, Frantz LAF, Bréhard S, Bălăşescu A, Mashkour M, Boroneanţ A, Pionnier-Capitan M, Lebrasseur O, Arbogast RM, Bartosiewicz L, Debue K, Rabinovich R, Sablin MV, Larson G, Hänni C, Hitte C, Vigne JD. Dogs accompanied humans during the Neolithic expansion into Europe. Biol Lett. 2018 Oct 17;14(10). pii: 20180286. doi: 10.1098/rsbl.2018.0286. PubMed PMID: 30333260; PubMed Central PMCID: PMC6227856.
Le Béguec C, Wucher V, Lagoutte L, Cadieu E, Botherel N, Hédan B, De Brito C, Guillory AS, André C, Derrien T, Hitte C. Characterisation and functional predictions of canine long non-coding RNAs. Sci Rep. 2018 Sep 7;8(1):13444. doi:10.1038/s41598-018-31770-2. PubMed PMID: 30194329; PubMed Central PMCID:PMC6128939.
Lorant J, Larcher T, Jaulin N, Hedan B, Lardenois A, Leroux I, Dubreil L, Ledevin M, Goubin H, Moullec S, Deschamps JY, Thorin C, André C, Adjali O, Rouger K. Vascular Delivery of Allogeneic MuStem Cells in Dystrophic Dogs Requires Only Short-Term Immunosuppression to Avoid Host Immunity and Generate Clinical/Tissue Benefits. Cell Transplant. 2018 Jul;27(7):1096-1110. doi:10.1177/0963689718776306. Epub 2018 Jun 5. PubMed PMID: 29871519; PubMed Central. PMCID: PMC6158548.
Bauer A, Jagannathan V, Högler S, Richter B, McEwan NA, Thomas A, Cadieu E, André C, Hytönen MK, Lohi H, Welle MM, Roosje P, Mellersh C, Casal ML, Leeb MKLN1 splicing defect in dogs with lethal acrodermatitis, PLoS Genet. 2018 Mar 22;14(3). PMID: 29565995
Acuña-Amador L, Primot A, Cadieu E, Roulet A, Barloy-Hubler F. Genomic repeats, misassembly and reannotation: a case study with long-read resequencing of Porphyromonas gingivalis reference strains. BMC Genomics. 2018 Jan 16;19(1):54. doi: 10.1186/s12864-017-4429-4. PubMed PMID: 29338683; PubMed Central PMCID: PMC5771137.
- 2017 :
Broeckx B, Derrien T, Mottier S, Wucher V, Cadieu E, Hedan B, Le Beguec C, Botherel N, Lindblad-Toh K, Saunders J.H, Deforce D, Andre C, Peelman L, Hitte C. An exome sequencing based approach for genome-wide association studies in the dog, Scientific Reports, 2017. PMID: 29142306
Ulve R*, Rault M*, Bahin M, Lagoutte L, Abadie J, De Brito C, Coindre JM, Botherel N, Rousseau A, Wucher V, Cadieu E, Thieblemont C, Hitte C, Cornevin L, Cabillic F, Bachelot L, Gilot D, Hennuy B, Guillaudeux T, Le Goff A, Derrien T, Hedan B, Andre C. Discovery of human-similar gene fusions in canine cancers. Cancer Res. 2017. PMID: 28883003
Meuric V, Le Gall-David S, Boyer E, Acuña-Amador L, Martin B, Fong SB, Barloy-Hubler F, Bonnaure-Mallet M. Signature of Microbial Dysbiosis in Periodontitis. Appl Environ Microbiol. 2017 Jun 30;83(14). pii: e00462-17. doi: 10.1128/AEM.00462-17. Print 2017 Jul 15. PubMed PMID: 28476771; PubMed Central PMCID: PMC5494626.
Mathers TC, Chen Y, Kaithakottil G, Legeai F, Mugford ST, Baa-Puyoulet P, Bretaudeau A, Clavijo B, Colella S, Collin O, Dalmay T, Derrien T, Feng H, Gabaldón T, Jordan A, Julca I, Kettles GJ, Kowitwanich K, Lavenier D, Lenzi P, Lopez-Gomollon S, Loska D, Mapleson D, Maumus F, Moxon S, Price DR, Sugio A, van Munster M, Uzest M, Waite D, Jander G, Tagu D, Wilson AC, van Oosterhout C, Swarbreck D, Hogenhout SA. Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species. Genome Biology, 2017. PMID: 28190401
Wucher V, Legeai F, Hédan B, Rizk G, Lagoutte L, Leeb T, Jagannathan V, Cadieu E, David A, Lohi H, Cirera S, Fredholm M, Botherel N, Leegwater PA, Le Béguec C, Fieten H, Johnson J, Alföldi J, André C, Lindblad-Toh K, Hitte C, Derrien T. FEELnc: a tool for long non-coding RNA annotation and its application to the dog transcriptome. Nucleic Acids Res., 2017. PMID: 28053114
Muret K, Klopp C, Wucher V, Esquerré D, Legeai F, Lecerf F, Désert C, Boutin M, Jehl F, Acloque H, Giuffra E, Djebali S, Foissac S, Derrien T, Lagarrigue S. Long noncoding RNA repertoire in chicken liver and adipose tissue. Genet Sel Evol. 2017. PMID: 28073357
Djebali S, Wucher V, Foissac S, Hitte C, Corre E, Derrien T. Bioinformatics Pipeline for Transcriptome Sequencing Analysis. Methods Mol Biol., 2017. PMID: 27662878
Koskinen LL, Seppälä EH, Weissl J, Jokinen TS, Viitmaa R, Hänninen RL, Quignon P, Fischer A, André C, Lohi H. ADAM23 is a common risk gene for canine idiopathic epilepsy. BMC Genet. 2017 Jan 31;18(1):8. doi: 10.1186/s12863-017-0478-6. PubMed PMID: 28143391; PubMed Central PMCID: PMC5282852.
Sandrine Le Gall-David, Vincent Meuric, Gaëlle Benzoni, Sophie Valière, Alain Guyonvarch, Jacques Minet, Martine Bonnaure-Mallet, Frédérique Barloy-Hubler. Effect of Zeolite on Small Intestine Microbiota of Broiler Chickens: A Case Study. Food and Nutrition Sciences 2017. Vol.8 No.1. Sciences 2017. Vol.8 No.1.
- 2016 :
Plassais J, Lagoutte L, Correard S, Paradis M, Guaguère E, Hédan B, Pommier A, Botherel N, Cadiergues MC, Pilorge P, Silversides D, Bizot M, Samuels M, Arnan C, Johnson R, Hitte C, Salbert G, Méreau A, Quignon P, Derrien T, André. A Point Mutation in a lincRNA Upstream of GDNF Is Associated to a Canine Insensitivity to Pain: A Spontaneous Model for Human Sensory Neuropathies. PLoS Genet. 2016. PMID: 28033318
Ollivier M, Tresset A, Bastian F, Lagoutte L, Axelsson E, Arendt M.J, Balasescu A, Marshour M, Pionnier-Capitan M, Sablin M.V, Salanova L, Vigne J.D, Hitte C, Hänni C. Amy2B copy number variation reveals starch diet adaptation in European ancient dogs. Royal Society Open Science, 2016. PMID: 28018628
Cormier A, Avia K, Sterck L, Derrien T, Wucher V, Andres G, Monsoor M, Godfroy O, Lipinska A, Perrineau MM, Van De Peer Y, Hitte C, Corre E, Coelho SM, Cock JM. Re-annotation, improved large-scale assembly and establishment of a catalogue of noncoding loci for the genome of the model brown alga Ectocarpus. New Phytol., 2016. PMID: 27870061
Frantz LA, Mullin VE, Pionnier-Capitan M, Lebrasseur O, Ollivier M, Perri A, Linderholm A, Mattiangeli V, Teasdale MD, Dimopoulos EA, Tresset A, Duffraisse M, McCormick F, Bartosiewicz L, Gál E, NyergesEA, Sablin MV, Bréhard S, Mashkour M, Balllasescu A, Gillet B, Hughes S, Chassaing O, Hitte C, Vigne JD, Dobney K, Hänni C,Bradley DG, Larson G. Genomic and archaeological evidence suggest a dual origin of domestic dogs. Science. 2016. PMID: 27257259
- 2015 :
Schmid M, Smith J, Burt DW, Aken BL, Antin PB, Archibald AL, Ashwell C, Blackshear PJ, Boschiero C, Brown CT, Burgess SC, Cheng HH, Chow W, Coble DJ, Cooksey A, Crooijmans RP, Damas J, Davis RV, de Koning DJ, Delany ME, Derrien T, Desta TT, Dunn IC, Dunn M, Ellegren H, Eöry L, Erb I, Farré M, Fasold M, Fleming D, Flicek P, Fowler KE, Frésard L, Froman DP, Garceau V, Gardner PP, Gheyas AA, Griffin DK, Groenen MA, Haaf T, Hanotte O, Hart A, Häsler J, Hedges SB, Hertel J, Howe K, Hubbard A, Hume DA, Kaiser P, Kedra D, Kemp SJ, Klopp C, Kniel KE, Kuo R, Lagarrigue S, Lamont SJ, Larkin DM, Lawal RA, Markland SM, McCarthy F, McCormack HA, McPherson MC, Motegi A, Muljo SA, Münsterberg A, Nag R, Nanda I, Neuberger M, Nitsche A, Notredame C, Noyes H, O’Connor R, O’Hare EA, Oler AJ, Ommeh SC, Pais H, Persia M, Pitel F, Preeyanon L, Prieto Barja P, Pritchett EM, Rhoads DD, Robinson CM, Romanov MN, Rothschild M, Roux PF, Schmidt CJ, Schneider AS, Schwartz MG, Searle SM, Skinner MA, Smith CA, Stadler PF, Steeves TE, Steinlein C, Sun L, Takata M, Ulitsky I, Wang Q, Wang Y, Warren WC, Wood JM, Wragg D, Zhou H. Third Report on Chicken Genes and Chromosomes 2015. Cytogenet Genome Res. 2015. PMID: 27257259
Abitbol M, Hitte C, Bossé P, Blanchard-Gutton N, Thomas A, Martignat L, Blot S, Tiret L. A COLQ Missense Mutation in Sphynx and Devon Rex Cats with Congenital Myasthenic Syndrome. PLoS One. 2015 Sep. PMID: 26327126
Broeckx BJ, Hitte C, Coopman F, Verhoeven GE, De Keulenaer S, De Meester E, Derrien T, Alfoldi J, Lindblad-Toh K, Bosmans T, Gielen I, Van Bree H, Van Ryssen B, Saunders JH, Van Nieuwerburgh F, Deforce D. Improved canine exome designs, featuring ncRNAs and increased coverage of protein coding genes. Sci Rep. 2015 Aug 3;5:12810 . PMID: 26235384
Leroy G, Phocas F, Hedan B, Verrier E, Rognon X. Inbreeding impact on litter size and survival in selected canine breeds. Vet J. 2015 Jan;203(1):74-8. PMID: 25475165
Plassais J, Guaguère E, Lagoutte L, Guillory AS, de Citres CD, Degorce-Rubiales F, Delverdier M, Vaysse A, Quignon P, Bleuart C, Hitte C, Fautrel A, Kaerle C, Bellaud P, Bensignor E, Queney G, Bourrat E, Thomas A, André C. A spontaneous KRT16 mutation in a dog breed: a model for human focal non-epidermolytic palmoplantar keratoderma (FNEPPK). J Invest Dermatol. 2015 Apr;135(4):1187-90. PMID: 25521457
- 2014 :
Chaudieu G, Olivier A, Thomas A, Bunel M, Albaric O, Lafont E, Quignon P, André C. Atrophie progressive de la rétine du Border Collie : étude rétrospective (1996-2012). PMCAC, Revue vétérinaire clinique. 09/2014; 49(3).
Drögemüller M, Jagannathan V, Becker D, Drögemüller C, Schelling C, Plassais J, Kaerle C, Dufaure de Citres C, Thomas A, Müller EJ, Welle MM, Roosje P, T. A mutation in the FAM83G gene in dogs with hereditary footpad hyperkeratosis (HFH). PLoS Genet. 2014 May 15. PMID: 24832243
Gillard M, Cadieu E, De Brito C, Abadie J, Vergier B, Devauchelle P, Degorce F, Dréano S, Primot A, Dorso L, Lagadic M, Galibert F, Hédan B, Galibert MD, André C. Naturally occurring melanomas in dogs as models for non-UV pathways of human melanomas. Pigment Cell Melanoma Res. 2014 Jan;27(1):90-102. PMID: 24112648
- 2013 :
Steijger T, Abril JF, Engström PG, Kokocinski F; RGASP Consortium, Hubbard TJ, Guigó R, Harrow J, Bertone P. Assessment of transcript reconstruction methods for RNA-seq. Nat Methods. 2013 Dec;10(12):1177-84. doi: 10.1038/nmeth.2714. Epub 2013 Nov 3. PubMed PMID: 24185837; PubMed Central PMCID: PMC3851240.
Engström PG, Steijger T, Sipos B, Grant GR, Kahles A, Rätsch G, Goldman N,
Hubbard TJ, Harrow J, Guigó R, Bertone P; RGASP Consortium. Systematic evaluation of spliced alignment programs for RNA-seq data. Nat Methods. 2013 Dec;10(12):1185-91. doi: 10.1038/nmeth.2722. Epub 2013 Nov 3. PubMed PMID: 24185836; PubMed Central PMCID: PMC4018468.
Ollivier M, Tresset A, Hitte C, Petit C, Hughes S, Gillet B, Duffraisse M, Pionnier-Capitan M, Lagoutte L, Arbogast RM, Balasescu A, Boroneant A, Mashkour M, Vigne JD, Hänni C. Evidence of coat color variation sheds new light on ancient canids. PLoS One. 2013 PMID: 24098367Andre C, Grall A, Guaguere E, Thomas A, Galibert F.
Andre C, Grall A, Guaguere E, Thomas A, Galibert F. Spontaneous models of human diseases in dogs: ichthyoses as an example. Bull Acad Natl Med. 2013 Jun;197(6):1225-30. French.
- 2012 :
Berglund J, Nevalainen EM, Molin AM, Perloski M, Lupa TL, Andre C, Zody MC, Sharpe T, Hitte C, Lindblad-Toh K, Lohi H, Webster MT. Novel origins of copy number variation in the dog genome. Genome Biol. 2012 Aug 23;13(8):R73. PMID: 22916802
Maurer M, Mary J, Guillaud L, Fender M, Pelé M, Bilzer T, Olby N, Penderis J, Shelton GD, Panthier JJ, Thibaud JL, Barthélémy I, Aubin-Houzelstein G, Blot S, Hitte C, Tiret L. Centronuclear myopathy in Labrador retrievers: a recent founder mutation in the PTPLA gene has rapidly disseminated worldwide. PLoS One. 2012;7(10). PMID: 23071563
Guyon R, Rakotomanga M, Azzouzi N, Coutanceau JP, Bonillo C, D’Cotta H, Pepey E, Soler L, Rodier-Goud M, D’Hont A, Conte MA, van Bers NE, Penman DJ, Hitte C, Crooijmans RP, Kocher TD, Ozouf-Costaz C, Baroiller JF, Galibert F. A high-resolution map of the Nile tilapia genome: a resource for studying cichlids and other percomorphs. BMC Genomics. 2012 Jun 6;13(1):222. PMID: 22672252
Shearin AL, Hedan B, Cadieu E, Erich SA, Schmidt EV, Faden DL, Cullen J, Abadie J, Kwon EM, Gröne A, Devauchelle P, Rimbault M, Karyadi DM, Lynch M, Galibert F, Breen M, Rutteman GR, André C, Parker HG, Ostrander EA. The MTAP-CDKN2A Locus Confers Susceptibility to a Naturally Occurring Canine Cancer. Cancer Epidemiol Biomarkers Prev. 2012 May 31. PMID: 22623710
Derrien T, Vaysse A, André C, Hitte C. Annotation of the domestic dog genome sequence: finding the missing genes. Mamm Genome. 2012 Feb;23(1-2):124-31. PMID: 22076420
Quignon P, Rimbault M, Robin S, Galibert F. Genetics of canine olfaction and receptor diversity. Mamm Genome. 2012 Feb;23(1-2):132-43. PMID: 2208030
Grall A, Guaguère E, Planchais S, Grond S, Bourrat E, Hausser I, Hitte C, Le
Gallo M, Derbois C, Kim GJ, Lagoutte L, Degorce-Rubiales F, Radner FP, Thomas A, Küry S, Bensignor E, Fontaine J, Pin D, Zimmermann R, Zechner R, Lathrop M, Galibert F, André C, Fischer J. PNPLA1 mutations cause autosomal recessive congenital ichthyosis in golden retriever dogs and humans. Nat Genet. 2012 Jan 15;44(2):140-7. doi: 10.1038/ng.1056. PubMed PMID: 22246504.
